Data is the future
of biomedicine ...

... and I contribute to discovery and innovation with the analysis and interpretation of large biomedical datasets.

From experimental and project planning for your omics studies to custom data analysis and development of analysis pipelines - I offer everything you need to advance your omics projects.

Want to know more? Click here for an overview of my services.

Who am I?

My name is Malte, and I'm a bioinformatician & biomedical researcher. I have 5+ years of experience in bioinformatics, biomedical research, and experimental generation of omics data.

As a result of my mixed background in computational biology, biomedical research, and hands-on experience with wet lab omics technologies, I know where the data comes from and what it means.

Let's connect.

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Services

I focus on custom-made analysis and interpretation solutions for your research.

Consultation

Assisting with everything related to big biomedical data.

  • Project planning & design
  • Custom data analysis & interpretation
  • Development of analysis pipelines
  • Training & Workshops

Transcriptomics

Understanding cell phenotypes and regulation based on gene expression.

  • Single-cell or bulk transcriptomics
  • Spatial transcriptomics
  • Non-coding RNA

Epigenomics

Profiling DNA modifications to study gene regulation.

  • Chromatin accessibility (ATAC)
  • DNA-protein interactions (ChIP)
  • DNA methylation

Proteomics

Examining the proteome to decode cellular functions.

  • Mass- and flow cytometry
  • Mass spectometry
  • Spatial proteomics

Immunomics

Analyzing immune system components, specificities, and their interactions.

  • T/B cell receptor repetoire
  • Cytokine profiling
  • High-dimensional flow cytometry

Other

Didn't find your application? These are examples of additional services.

  • Multiomics integration
  • Meta analyses
  • Other custom analyses

Projects & Publications

An overview of selected projects and publications.

Microglia development in human central nervous system

Tracking the dynamics of microglia fetal development using a combination of transcriptomics and epigenomics.

  • Bulk mRNA sequencing
  • Single-cell mRNA sequencing
  • Bulk ATAC sequencing
  • Integration of multiomics

Published in Science

High-dimensional cytometry analysis toolkit

Developing an R toolkit for the analysis of high-dimensional flow- & mass cytometry data.

  • Advanced data cleaning algorithms
  • Preprocessing & downstream analysis
  • Integration in single-cell mRNA sequencing frameworks
  • Open source

Preprint on bioRxiv

Glia function in neuroinflammation

Determining astrocyte and microglia phenotypes during inflammation of the central nervous system.

  • Bulk RNAseq
  • Glia morphology analysis
  • Automatic immunohistochemistry analysis

Publication in Glia and Acta Neuropathologica Communications

Contact

Please feel free to get in touch or schedule an initial consultation with me.

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Frequently asked questions